IL_9HA6_036

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9HA6|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1843

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9HA6|1|A|U|1018
9HA6|1|A|U|1019
9HA6|1|A|A|1020
9HA6|1|A|A|1021
9HA6|1|A|G|1022
9HA6|1|A|U|1023
9HA6|1|A|G|1024
*
9HA6|1|A|C|1140
9HA6|1|A|U|1141
9HA6|1|A|A|1142
9HA6|1|A|A|1143
9HA6|1|A|A|1144

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain J

Large ribosomal subunit protein uL13