IL_9HA6_043

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9HA6|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_043 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1939

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9HA6|1|A|G|1202
9HA6|1|A|U|1203
9HA6|1|A|A|1204
9HA6|1|A|A|1205
9HA6|1|A|G|1206
*
9HA6|1|A|U|1240
9HA6|1|A|A|1241
9HA6|1|A|U|1242
9HA6|1|A|C|1243

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15