3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_045 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.1228
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

9HA6|1|A|A|1262
9HA6|1|A|U|1263
9HA6|1|A|A|1264
9HA6|1|A|A|1265
9HA6|1|A|G|1266
9HA6|1|A|U|1267
9HA6|1|A|A|1268
9HA6|1|A|A|1269
*
9HA6|1|A|U|2011
9HA6|1|A|G|2012
9HA6|1|A|A|2013
9HA6|1|A|A|2014
9HA6|1|A|A|2015
9HA6|1|A|U|2016
9HA6|1|A|U|2017

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL32
Chain E
Large ribosomal subunit protein uL4
Chain S
Large ribosomal subunit protein uL22

Coloring options:


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