IL_9HA6_049

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_049 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1448

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9HA6|1|A|C|1357
9HA6|1|A|G|1358
9HA6|1|A|A|1359
9HA6|1|A|G|1360
9HA6|1|A|G|1361
*
9HA6|1|A|C|1370
9HA6|1|A|G|1371
9HA6|1|A|U|1372
9HA6|1|A|A|1373
9HA6|1|A|G|1374

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2

Chain X

Large ribosomal subunit protein bL28