IL_9HA6_051

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9HA6|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_051 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.2626

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9HA6|1|A|C|1417
9HA6|1|A|G|1418
9HA6|1|A|A|1419
9HA6|1|A|A|1420
9HA6|1|A|G|1421
*
9HA6|1|A|C|1577
9HA6|1|A|U|1578
9HA6|1|A|A|1579
9HA6|1|A|A|1580
9HA6|1|A|G|1581

Current chains

Chain A

23S ribosomal rRNA

Nearby chains