IL_9HA6_060

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_060 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.1534

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9HA6|1|A|G|1651
9HA6|1|A|A|1652
9HA6|1|A|G|1653
9HA6|1|A|A|1654
9HA6|1|A|A|1655
9HA6|1|A|C|1656
*
9HA6|1|A|G|2004
9HA6|1|A|A|2005
9HA6|1|A|C|2006

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17