IL_9HA6_063

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_063 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.1629

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

9HA6|1|A|G|1666
9HA6|1|A|G|1667
9HA6|1|A|A|1668
9HA6|1|A|A|1669
9HA6|1|A|C|1670
9HA6|1|A|U|1671
9HA6|1|A|A|1672
9HA6|1|A|G|1673
9HA6|1|A|G|1674
*
9HA6|1|A|C|1990
9HA6|1|A|U|1991
9HA6|1|A|G|1992
9HA6|1|A|U|1993
9HA6|1|A|C|1994

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14