3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
9HA6|1|A|A|1938, 9HA6|1|A|U|1944, 9HA6|1|A|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_076 not in the Motif Atlas
Homologous match to IL_7A0S_072
Geometric discrepancy: 0.228
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

9HA6|1|A|C|1934
9HA6|1|A|G|1935
9HA6|1|A|A|1936
9HA6|1|A|A|1937
9HA6|1|A|A|1938
9HA6|1|A|U|1939
9HA6|1|A|U|1940
9HA6|1|A|C|1941
9HA6|1|A|C|1942
9HA6|1|A|U|1943
9HA6|1|A|U|1944
9HA6|1|A|G|1945
*
9HA6|1|A|C|1961
9HA6|1|A|C|1962
9HA6|1|A|U|1963
9HA6|1|A|G|1964

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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