IL_9HA6_085

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

9HA6|1|A|U|2130, 9HA6|1|A|U|2132, 9HA6|1|A|G|2159, 9HA6|1|A|G|2168, 9HA6|1|A|A|2169, 9HA6|1|A|U|2172, 9HA6|1|A|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA6|1|A|G|2124
9HA6|1|A|G|2125
9HA6|1|A|A|2126
9HA6|1|A|G|2127
9HA6|1|A|G|2128
9HA6|1|A|C|2129
9HA6|1|A|U|2130
9HA6|1|A|U|2131
9HA6|1|A|U|2132
9HA6|1|A|G|2133
9HA6|1|A|A|2134
9HA6|1|A|A|2135
9HA6|1|A|G|2136
9HA6|1|A|U|2137
*
9HA6|1|A|A|2154
9HA6|1|A|U|2155
9HA6|1|A|G|2156
9HA6|1|A|G|2157
9HA6|1|A|A|2158
9HA6|1|A|G|2159
9HA6|1|A|C|2160
9HA6|1|A|C|2161
9HA6|1|A|G|2162
9HA6|1|A|A|2163
9HA6|1|A|C|2164
9HA6|1|A|C|2165
9HA6|1|A|U|2166
9HA6|1|A|U|2167
9HA6|1|A|G|2168
9HA6|1|A|A|2169
9HA6|1|A|A|2170
9HA6|1|A|A|2171
9HA6|1|A|U|2172
9HA6|1|A|A|2173
9HA6|1|A|C|2174

Current chains

Chain A

23S ribosomal rRNA

Nearby chains