IL_9HA6_095

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9HA6|1|A|G|2576, 9HA6|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_095 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1516

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9HA6|1|A|C|2510
9HA6|1|A|U|2511
9HA6|1|A|C|2512
*
9HA6|1|A|G|2574
9HA6|1|A|C|2575
9HA6|1|A|G|2576
9HA6|1|A|A|2577
9HA6|1|A|G|2578

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

50S ribosomal protein L3

Chain z

Apidaecins type 22