IL_9HA6_098

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9HA6|1|A|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_098 not in the Motif Atlas

Geometric match to IL_2QUX_002

Geometric discrepancy: 0.2445

The information below is about IL_2QUX_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9HA6|1|A|C|2591
9HA6|1|A|G|2592
*
9HA6|1|A|C|2601
9HA6|1|A|A|2602
9HA6|1|A|G|2603

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2