IL_9HA6_109

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_109 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1578

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|U|2847
9HA6|1|A|G|2848
9HA6|1|A|U|2849
9HA6|1|A|A|2850
9HA6|1|A|A|2851
9HA6|1|A|G|2852
*
9HA6|1|A|U|2865
9HA6|1|A|U|2866
9HA6|1|A|G|2867
9HA6|1|A|A|2868
9HA6|1|A|G|2869

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17

Chain P

Large ribosomal subunit protein bL19