IL_9HAI_022

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAI_022 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.2025

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9HAI|1|A|G|856
9HAI|1|A|G|857
9HAI|1|A|G|858
9HAI|1|A|G|859
9HAI|1|A|U|860
9HAI|1|A|A|861
9HAI|1|A|G|862
*
9HAI|1|A|C|915
9HAI|1|A|G|916
9HAI|1|A|A|917
9HAI|1|A|A|918
9HAI|1|A|U|919
9HAI|1|A|A|920
9HAI|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30