IL_9HAL_030

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

9HAL|1|A|G|1128, 9HAL|1|A|U|1130, 9HAL|1|A|G|1131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAL_030 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.4905

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9HAL|1|A|G|1024
9HAL|1|A|G|1025
9HAL|1|A|G|1026
9HAL|1|A|A|1027
9HAL|1|A|A|1028
9HAL|1|A|A|1029
9HAL|1|A|C|1030
*
9HAL|1|A|G|1124
9HAL|1|A|G|1125
9HAL|1|A|A|1126
9HAL|1|A|A|1127
9HAL|1|A|G|1128
9HAL|1|A|A|1129
9HAL|1|A|U|1130
9HAL|1|A|G|1131
9HAL|1|A|U|1132
9HAL|1|A|A|1133
9HAL|1|A|A|1134
9HAL|1|A|C|1135
9HAL|1|A|G|1136
9HAL|1|A|G|1137
9HAL|1|A|G|1138
9HAL|1|A|G|1139
9HAL|1|A|C|1140

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13