IL_9HAM_020

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9HAM|1|A|U|846, 9HAM|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_020 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3441

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9HAM|1|A|A|844
9HAM|1|A|A|845
9HAM|1|A|U|846
9HAM|1|A|U|847
9HAM|1|A|C|848
*
9HAM|1|A|G|930
9HAM|1|A|U|931
9HAM|1|A|U|932
9HAM|1|A|A|933
9HAM|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30