IL_9HAM_032

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_032 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.3355

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9HAM|1|A|A|1262
9HAM|1|A|U|1263
9HAM|1|A|A|1264
9HAM|1|A|A|1265
9HAM|1|A|G|1266
9HAM|1|A|U|1267
9HAM|1|A|A|1268
9HAM|1|A|A|1269
*
9HAM|1|A|U|2011
9HAM|1|A|G|2012
9HAM|1|A|A|2013
9HAM|1|A|A|2014
9HAM|1|A|A|2015
9HAM|1|A|U|2016
9HAM|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains