IL_9HAM_051

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9HAM|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAM_051 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2079

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HAM|1|A|U|1712
9HAM|1|A|A|1713
9HAM|1|A|U|1714
9HAM|1|A|G|1715
9HAM|1|A|U|1716
9HAM|1|A|A|1717
9HAM|1|A|G|1718
*
9HAM|1|A|U|1742
9HAM|1|A|G|1743
9HAM|1|A|A|1744
9HAM|1|A|A|1745
9HAM|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains