IL_9HFM_022

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HFM_022 not in the Motif Atlas

Geometric match to IL_6CZR_135

Geometric discrepancy: 0.2041

The information below is about IL_6CZR_135

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9HFM|1|A|A|1067
9HFM|1|A|A|1068
9HFM|1|A|A|1069
9HFM|1|A|C|1070
9HFM|1|A|U|1071
*
9HFM|1|A|A|1087
9HFM|1|A|C|1088
9HFM|1|A|U|1089
9HFM|1|A|A|1090
9HFM|1|A|U|1091

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain I

28S ribosomal protein S11, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m