IL_9HFO_011
3D structure
- PDB id
- 9HFO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State G)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HFO_011 not in the Motif Atlas
- Geometric match to IL_3DIL_004
- Geometric discrepancy: 0.1802
- The information below is about IL_3DIL_004
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
9HFO|1|A|G|762
9HFO|1|A|C|763
9HFO|1|A|A|764
9HFO|1|A|C|765
*
9HFO|1|A|G|777
9HFO|1|A|C|778
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 0
- 28S ribosomal protein S34, mitochondrial
- Chain 3
- Aurora kinase A-interacting protein
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
Coloring options: