IL_9HFO_018

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

9HFO|1|A|C|904, 9HFO|1|A|C|906, 9HFO|1|A|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HFO_018 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.2618

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HFO|1|A|G|887
9HFO|1|A|U|888
9HFO|1|A|G|889
9HFO|1|A|C|890
9HFO|1|A|C|891
9HFO|1|A|A|892
9HFO|1|A|G|893
*
9HFO|1|A|C|900
9HFO|1|A|G|901
9HFO|1|A|G|902
9HFO|1|A|U|903
9HFO|1|A|C|904
9HFO|1|A|A|905
9HFO|1|A|C|906
9HFO|1|A|A|907
9HFO|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial