IL_9HLZ_004

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9HLZ|1|AA|A|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_004 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.194

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9HLZ|1|AA|C|96
9HLZ|1|AA|U|97
*
9HLZ|1|AA|A|378
9HLZ|1|AA|A|379
9HLZ|1|AA|G|380

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain DD

Large ribosomal subunit protein uL4m