IL_9HLZ_009

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_009 not in the Motif Atlas

Geometric match to IL_9E6Q_110

Geometric discrepancy: 0.1406

The information below is about IL_9E6Q_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HLZ|1|AA|U|279
9HLZ|1|AA|G|280
9HLZ|1|AA|A|281
9HLZ|1|AA|G|282
9HLZ|1|AA|U|283
9HLZ|1|AA|A|284
9HLZ|1|AA|U|285
*
9HLZ|1|AA|A|293
9HLZ|1|AA|G|294
9HLZ|1|AA|A|295
9HLZ|1|AA|A|296
9HLZ|1|AA|A|297
9HLZ|1|AA|A|298

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain ZZ

Large ribosomal subunit protein bL35m