IL_9HLZ_011

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_011 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.1442

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9HLZ|1|AA|C|463
9HLZ|1|AA|C|464
9HLZ|1|AA|U|465
*
9HLZ|1|AA|A|474
9HLZ|1|AA|U|475
9HLZ|1|AA|G|476

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain DD

Large ribosomal subunit protein uL4m

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m