IL_9HLZ_032

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAUAAAU*AGAUAAUAUACGGAU

Length

23 nucleotides

Bulged bases

9HLZ|1|AA|A|951, 9HLZ|1|AA|A|952, 9HLZ|1|AA|U|953, 9HLZ|1|AA|U|1094, 9HLZ|1|AA|U|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|AA|A|950
9HLZ|1|AA|A|951
9HLZ|1|AA|A|952
9HLZ|1|AA|U|953
9HLZ|1|AA|A|954
9HLZ|1|AA|A|955
9HLZ|1|AA|A|956
9HLZ|1|AA|U|957
*
9HLZ|1|AA|A|1091
9HLZ|1|AA|G|1092
9HLZ|1|AA|A|1093
9HLZ|1|AA|U|1094
9HLZ|1|AA|A|1095
9HLZ|1|AA|A|1096
9HLZ|1|AA|U|1097
9HLZ|1|AA|A|1098
9HLZ|1|AA|U|1099
9HLZ|1|AA|A|1100
9HLZ|1|AA|C|1101
9HLZ|1|AA|G|1102
9HLZ|1|AA|G|1103
9HLZ|1|AA|A|1104
9HLZ|1|AA|U|1105

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain CC

Large ribosomal subunit protein uL3m

Chain HH

Large ribosomal subunit protein uL13m

Chain KK

Large ribosomal subunit protein uL16m

Chain cc

Large ribosomal subunit protein mL60