IL_9HLZ_049

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_049 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0945

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9HLZ|1|AA|G|1618
9HLZ|1|AA|G|1619
9HLZ|1|AA|A|1620
9HLZ|1|AA|A|1621
9HLZ|1|AA|C|1622
9HLZ|1|AA|U|1623
9HLZ|1|AA|C|1624
9HLZ|1|AA|G|1625
9HLZ|1|AA|G|1626
*
9HLZ|1|AA|C|1890
9HLZ|1|AA|U|1891
9HLZ|1|AA|G|1892
9HLZ|1|AA|U|1893
9HLZ|1|AA|C|1894

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m