IL_9HLZ_079

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9HLZ|1|AA|G|2843, 9HLZ|1|AA|A|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_079 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1515

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9HLZ|1|AA|C|2776
9HLZ|1|AA|U|2777
9HLZ|1|AA|C|2778
*
9HLZ|1|AA|G|2841
9HLZ|1|AA|U|2842
9HLZ|1|AA|G|2843
9HLZ|1|AA|A|2844
9HLZ|1|AA|G|2845

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain II

Large ribosomal subunit protein uL14m

Chain WW

Large ribosomal subunit protein bL32m