IL_9HLZ_086

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAU*AUAAG

Length

10 nucleotides

Bulged bases

9HLZ|1|AA|U|2956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_086 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.1668

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9HLZ|1|AA|U|2954
9HLZ|1|AA|G|2955
9HLZ|1|AA|U|2956
9HLZ|1|AA|A|2957
9HLZ|1|AA|U|2958
*
9HLZ|1|AA|A|3054
9HLZ|1|AA|U|3055
9HLZ|1|AA|A|3056
9HLZ|1|AA|A|3057
9HLZ|1|AA|G|3058

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m