IL_9HLZ_095

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UA

Length

5 nucleotides

Bulged bases

9HLZ|1|r|A|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_095 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.2429

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

9HLZ|1|r|U|37
9HLZ|1|r|A|38
9HLZ|1|r|A|39
*
9HLZ|1|r|U|666
9HLZ|1|r|A|667

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 6

Small ribosomal subunit protein mS45

Chain L

Small ribosomal subunit protein uS12m