IL_9HLZ_114

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGACUAAUAU*AGA

Length

13 nucleotides

Bulged bases

9HLZ|1|r|U|624, 9HLZ|1|r|A|625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|r|U|617
9HLZ|1|r|G|618
9HLZ|1|r|A|619
9HLZ|1|r|C|620
9HLZ|1|r|U|621
9HLZ|1|r|A|622
9HLZ|1|r|A|623
9HLZ|1|r|U|624
9HLZ|1|r|A|625
9HLZ|1|r|U|626
*
9HLZ|1|r|A|653
9HLZ|1|r|G|654
9HLZ|1|r|A|655

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 6

Small ribosomal subunit protein mS45

Chain D

Small ribosomal subunit protein uS4m

Chain L

Small ribosomal subunit protein uS12m