IL_9HLZ_126

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

9HLZ|1|r|A|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_126 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.1929

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9HLZ|1|r|G|987
9HLZ|1|r|A|988
9HLZ|1|r|C|989
*
9HLZ|1|r|G|1460
9HLZ|1|r|C|1461
9HLZ|1|r|A|1462
9HLZ|1|r|C|1463

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain E

Small ribosomal subunit protein uS5m