IL_9HLZ_139

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUU*AUGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_139 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1969

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|r|U|1371
9HLZ|1|r|G|1372
9HLZ|1|r|A|1373
9HLZ|1|r|A|1374
9HLZ|1|r|U|1375
9HLZ|1|r|U|1376
*
9HLZ|1|r|A|1397
9HLZ|1|r|U|1398
9HLZ|1|r|G|1399
9HLZ|1|r|A|1400
9HLZ|1|r|A|1401
9HLZ|1|r|A|1402

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13m