IL_9HM0_009

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAGUAU*AGAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_009 not in the Motif Atlas

Geometric match to IL_9E6Q_110

Geometric discrepancy: 0.1114

The information below is about IL_9E6Q_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HM0|1|AA|U|279
9HM0|1|AA|G|280
9HM0|1|AA|A|281
9HM0|1|AA|G|282
9HM0|1|AA|U|283
9HM0|1|AA|A|284
9HM0|1|AA|U|285
*
9HM0|1|AA|A|293
9HM0|1|AA|G|294
9HM0|1|AA|A|295
9HM0|1|AA|A|296
9HM0|1|AA|A|297
9HM0|1|AA|A|298

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain ZZ

Large ribosomal subunit protein bL35m