IL_9HM0_017

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_017 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.1248

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9HM0|1|AA|G|629
9HM0|1|AA|G|630
9HM0|1|AA|U|631
9HM0|1|AA|U|632
*
9HM0|1|AA|A|647
9HM0|1|AA|U|648
9HM0|1|AA|C|649

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain YY

Large ribosomal subunit protein bL34m