IL_9HM0_026

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_026 not in the Motif Atlas

Homologous match to IL_7A0S_031

Geometric discrepancy: 0.352

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9HM0|1|AA|U|877
9HM0|1|AA|G|878
9HM0|1|AA|U|879
*
9HM0|1|AA|A|890
9HM0|1|AA|A|891
9HM0|1|AA|A|892

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain KK

Large ribosomal subunit protein uL16m

Chain cc

Large ribosomal subunit protein mL60