IL_9HM0_030

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAAUAAAU*AGAUAAUAUACGGAU

Length

23 nucleotides

Bulged bases

9HM0|1|AA|A|951, 9HM0|1|AA|A|952, 9HM0|1|AA|U|953, 9HM0|1|AA|U|1094, 9HM0|1|AA|U|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|A|950
9HM0|1|AA|A|951
9HM0|1|AA|A|952
9HM0|1|AA|U|953
9HM0|1|AA|A|954
9HM0|1|AA|A|955
9HM0|1|AA|A|956
9HM0|1|AA|U|957
*
9HM0|1|AA|A|1091
9HM0|1|AA|G|1092
9HM0|1|AA|A|1093
9HM0|1|AA|U|1094
9HM0|1|AA|A|1095
9HM0|1|AA|A|1096
9HM0|1|AA|U|1097
9HM0|1|AA|A|1098
9HM0|1|AA|U|1099
9HM0|1|AA|A|1100
9HM0|1|AA|C|1101
9HM0|1|AA|G|1102
9HM0|1|AA|G|1103
9HM0|1|AA|A|1104
9HM0|1|AA|U|1105

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain CC

Large ribosomal subunit protein uL3m

Chain HH

Large ribosomal subunit protein uL13m

Chain KK

Large ribosomal subunit protein uL16m

Chain cc

Large ribosomal subunit protein mL60