IL_9HM0_035

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAU*AGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_035 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1757

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9HM0|1|AA|C|1364
9HM0|1|AA|U|1365
9HM0|1|AA|A|1366
9HM0|1|AA|A|1367
9HM0|1|AA|U|1368
*
9HM0|1|AA|A|1397
9HM0|1|AA|G|1398
9HM0|1|AA|A|1399
9HM0|1|AA|U|1400
9HM0|1|AA|G|1401

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain BB

Large ribosomal subunit protein uL2m

Chain YY

Large ribosomal subunit protein bL34m