IL_9HM0_048

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUAAG*CAAUAAAG

Length

14 nucleotides

Bulged bases

9HM0|1|AA|U|1652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|C|1638
9HM0|1|AA|A|1639
9HM0|1|AA|U|1640
9HM0|1|AA|A|1641
9HM0|1|AA|A|1642
9HM0|1|AA|G|1643
*
9HM0|1|AA|C|1649
9HM0|1|AA|A|1650
9HM0|1|AA|A|1651
9HM0|1|AA|U|1652
9HM0|1|AA|A|1653
9HM0|1|AA|A|1654
9HM0|1|AA|A|1655
9HM0|1|AA|G|1656

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain BB

Large ribosomal subunit protein uL2m

Chain O

Small ribosomal subunit protein uS15m

Chain r

Small subunit ribosomal RNA; SSU rRNA