IL_9HM0_053

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAUAUAAAU*AAUUAAAUU

Length

19 nucleotides

Bulged bases

9HM0|1|AA|U|1756, 9HM0|1|AA|A|1787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|A|1755
9HM0|1|AA|U|1756
9HM0|1|AA|A|1757
9HM0|1|AA|U|1758
9HM0|1|AA|A|1759
9HM0|1|AA|U|1760
9HM0|1|AA|A|1761
9HM0|1|AA|A|1762
9HM0|1|AA|A|1763
9HM0|1|AA|U|1764
*
9HM0|1|AA|A|1786
9HM0|1|AA|A|1787
9HM0|1|AA|U|1788
9HM0|1|AA|U|1789
9HM0|1|AA|A|1790
9HM0|1|AA|A|1791
9HM0|1|AA|A|1792
9HM0|1|AA|U|1793
9HM0|1|AA|U|1794

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2m

Chain GG

Large ribosomal subunit protein bL9m

Chain r

Small subunit ribosomal RNA; SSU rRNA