IL_9HM0_057
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 9HM0|1|AA|A|1838, 9HM0|1|AA|U|1844, 9HM0|1|AA|C|1863
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_057 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2845
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9HM0|1|AA|C|1834
9HM0|1|AA|G|1835
9HM0|1|AA|A|1836
9HM0|1|AA|A|1837
9HM0|1|AA|A|1838
9HM0|1|AA|U|1839
9HM0|1|AA|U|1840
9HM0|1|AA|C|1841
9HM0|1|AA|C|1842
9HM0|1|AA|U|1843
9HM0|1|AA|U|1844
9HM0|1|AA|G|1845
*
9HM0|1|AA|C|1861
9HM0|1|AA|C|1862
9HM0|1|AA|C|1863
9HM0|1|AA|G|1864
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein mS38
- Chain BB
- Large ribosomal subunit protein uL2m
- Chain r
- Small subunit ribosomal RNA; SSU rRNA
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