IL_9HM0_076

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_076 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1841

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9HM0|1|AA|A|2725
9HM0|1|AA|U|2726
9HM0|1|AA|A|2727
*
9HM0|1|AA|U|2755
9HM0|1|AA|G|2756
9HM0|1|AA|U|2757
9HM0|1|AA|U|2758
9HM0|1|AA|U|2759

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain KK

Large ribosomal subunit protein uL16m