IL_9HM0_083

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAU*AUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_083 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1706

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9HM0|1|AA|C|2902
9HM0|1|AA|A|2903
9HM0|1|AA|A|2904
9HM0|1|AA|A|2905
9HM0|1|AA|U|2906
*
9HM0|1|AA|A|3112
9HM0|1|AA|U|3113
9HM0|1|AA|A|3114
9HM0|1|AA|A|3115
9HM0|1|AA|G|3116

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain HH

Large ribosomal subunit protein uL13m