IL_9HM0_086

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAU*AUAAG

Length

10 nucleotides

Bulged bases

9HM0|1|AA|U|2956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_086 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.1565

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9HM0|1|AA|U|2954
9HM0|1|AA|G|2955
9HM0|1|AA|U|2956
9HM0|1|AA|A|2957
9HM0|1|AA|U|2958
*
9HM0|1|AA|A|3054
9HM0|1|AA|U|3055
9HM0|1|AA|A|3056
9HM0|1|AA|A|3057
9HM0|1|AA|G|3058

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m