IL_9HM0_102

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

9HM0|1|r|A|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_102 not in the Motif Atlas

Geometric match to IL_8OI5_134

Geometric discrepancy: 0.1888

The information below is about IL_8OI5_134

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9HM0|1|r|U|127
9HM0|1|r|A|128
9HM0|1|r|G|129
*
9HM0|1|r|C|238
9HM0|1|r|A|239

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17m

Chain V

Small ribosomal subunit protein mS26