IL_9HM0_117

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGACUAAUAU*AGA

Length

13 nucleotides

Bulged bases

9HM0|1|r|U|624, 9HM0|1|r|A|625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|U|617
9HM0|1|r|G|618
9HM0|1|r|A|619
9HM0|1|r|C|620
9HM0|1|r|U|621
9HM0|1|r|A|622
9HM0|1|r|A|623
9HM0|1|r|U|624
9HM0|1|r|A|625
9HM0|1|r|U|626
*
9HM0|1|r|A|653
9HM0|1|r|G|654
9HM0|1|r|A|655

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 6

Small ribosomal subunit protein mS45

Chain D

Small ribosomal subunit protein uS4m

Chain E

Small ribosomal subunit protein uS5m

Chain L

Small ribosomal subunit protein uS12m