IL_9HM0_122

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAA*UU

Length

5 nucleotides

Bulged bases

9HM0|1|r|A|694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_122 not in the Motif Atlas

Geometric match to IL_1CSL_002

Geometric discrepancy: 0.2827

The information below is about IL_1CSL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9HM0|1|r|G|693
9HM0|1|r|A|694
9HM0|1|r|A|695
*
9HM0|1|r|U|821
9HM0|1|r|U|822

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8m

Chain L

Small ribosomal subunit protein uS12m

Chain O

Small ribosomal subunit protein uS15m

Chain Q

Small ribosomal subunit protein uS17m