IL_9HM0_129

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGAGUACGU*AUGAAACU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|A|951
9HM0|1|r|A|952
9HM0|1|r|G|953
9HM0|1|r|A|954
9HM0|1|r|G|955
9HM0|1|r|U|956
9HM0|1|r|A|957
9HM0|1|r|C|958
9HM0|1|r|G|959
9HM0|1|r|U|960
*
9HM0|1|r|A|969
9HM0|1|r|U|970
9HM0|1|r|G|971
9HM0|1|r|A|972
9HM0|1|r|A|973
9HM0|1|r|A|974
9HM0|1|r|C|975
9HM0|1|r|U|976

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain L

Small ribosomal subunit protein uS12m