IL_9HM0_132

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUA*UAGACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|U|1015
9HM0|1|r|G|1016
9HM0|1|r|U|1017
9HM0|1|r|U|1018
9HM0|1|r|A|1019
*
9HM0|1|r|U|1258
9HM0|1|r|A|1259
9HM0|1|r|G|1260
9HM0|1|r|A|1261
9HM0|1|r|C|1262
9HM0|1|r|G|1263

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9m

Chain M

Small ribosomal subunit protein uS13m

Chain S

Small ribosomal subunit protein uS19m

Chain t

Transfer RNA; tRNA