IL_9HM0_137

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUACAUUG*UCAUAAUGAU

Length

19 nucleotides

Bulged bases

9HM0|1|r|C|1101, 9HM0|1|r|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|r|G|1097
9HM0|1|r|U|1098
9HM0|1|r|U|1099
9HM0|1|r|A|1100
9HM0|1|r|C|1101
9HM0|1|r|A|1102
9HM0|1|r|U|1103
9HM0|1|r|U|1104
9HM0|1|r|G|1105
*
9HM0|1|r|U|1231
9HM0|1|r|C|1232
9HM0|1|r|A|1233
9HM0|1|r|U|1234
9HM0|1|r|A|1235
9HM0|1|r|A|1236
9HM0|1|r|U|1237
9HM0|1|r|G|1238
9HM0|1|r|A|1239
9HM0|1|r|U|1240

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3m

Chain J

Small ribosomal subunit protein uS10m

Chain N

Small ribosomal subunit protein uS14m

Chain X

Small ribosomal subunit protein mS33