IL_9HM0_140

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAAA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_140 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.1747

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9HM0|1|r|A|1273
9HM0|1|r|A|1274
9HM0|1|r|A|1275
9HM0|1|r|A|1276
*
9HM0|1|r|U|1333
9HM0|1|r|U|1334
9HM0|1|r|U|1335
9HM0|1|r|U|1336

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7m

Chain M

Small ribosomal subunit protein uS13m

Chain W

Small ribosomal subunit protein mS29