IL_9HM0_143
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAAAA*UUUAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_143 not in the Motif Atlas
- Geometric match to IL_8P9A_254
- Geometric discrepancy: 0.2587
- The information below is about IL_8P9A_254
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9HM0|1|r|A|1292
9HM0|1|r|U|1293
9HM0|1|r|A|1294
9HM0|1|r|A|1295
9HM0|1|r|A|1296
9HM0|1|r|A|1297
*
9HM0|1|r|U|1312
9HM0|1|r|U|1313
9HM0|1|r|U|1314
9HM0|1|r|A|1315
9HM0|1|r|A|1316
9HM0|1|r|U|1317
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain 7
- Small ribosomal subunit protein mS46
- Chain J
- Small ribosomal subunit protein uS10m
- Chain S
- Small ribosomal subunit protein uS19m
- Chain W
- Small ribosomal subunit protein mS29
- Chain X
- Small ribosomal subunit protein mS33
- Chain Y
- Small ribosomal subunit protein mS35
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